Channel Title: Ensembl Training Channel Description: The Ensembl genome browser at www.ensembl.org allows scientists to investigate biological annotation of chordate (mostly vertebrate) genomes. Protein-coding and non-coding genes, splice variants, conserved regions across species, sequence variation and information about gene regulation are all available. EnsemblGenomes at www.ensemblgenomes.org extends genome browsing to bacteria, metazoa, protists, plants and fungi. BioMart allows all users to quickly export data in formats that can be opening in MS Excel. A Perl API allows direct access to Ensembl databases. All Ensembl resources are free and open source. We make these videos using Camtasia (TechSmith). <video> The Ensembl Rapid Release genome browser - webinar Description: The Ensembl Rapid Release genome browser is a new, lightweight genome browser designed to allow quick release of the latest genome annotation for a large number of vertebrate and non-vertebrate species. This is a recording of a webinar delivered on 7th October 2020 to introduce the main data types available through the Ensembl Rapid Release genome browser. </video> <video> Virtual Workshop - The Ensembl Genome Browser - (2021): Webinar 3 - Variation data and the VEP Description: Introduction to Ensembl variation data with demos for browsing and retrieving data relating variants as well as analysing variation datasets using the Variant Effect Predictor (VEP). This video was recorded as part of a virtual workshop on 27th January 2021. </video> <video> Ensembl Browser Workshop (Baze University, 23rd June 2022) Description: Ensembl browser workshop (Ensembl release 106) recording for Baze University. Timestamps: 00:00:00 Introduction 01:15:20 Variation 01:59:19 The Variant Effect Predictor (VEP) 02:23:59 Comparative genomics 03:11:13 Regulation 03:47:43 BioMart 04:25:26 Closing remarks </video> <video> 5 Regulation Description: </video> <video> Virtual Workshop - The Ensembl Genome Browser - (2021): Webinar 2 - Genes and Transcripts Description: Introduction to Ensembl gene annotation with demos for browsing and retrieving data relating genes and transcripts. This video was recorded as part of a virtual workshop on 26th January 2021. </video> <video> Ensembl Browser Workshop - Day 3 (St. Xavier's College, 30th June 2022) Description: Ensembl browser workshop (Ensembl release 106) recording for St. Xavier's College. Timestamps: 00:00:00 Comparative genomics 00:45:09 BioMart 01:12:00 Visualising your own data </video> <video> Ensembl Browser Workshop - Day 1 (DKFZ, 26th April 2022) Description: Ensembl browser workshop (Ensembl release 106) recording for DKFZ. Timestamps: 00:00:00 Introduction 00:37:30 Exploring genomic regions 00:56:49 Genes and transcripts 01:36:25 Comparative genomics </video> <video> Ensembl Browser Workshop (Avans Hogeschool, 22nd April 2022) Description: Ensembl browser workshop (Ensembl release 106) recording for Avans Hogeschool. Timestamps: 00:00:00 Introduction 00:42:30 Exploring genomic regions 01:07:27 Genes and transcripts 02:00:05 BioMart 02:19:30 Closing remarks </video> <video> Virtual Workshop - The Ensembl Genome Browser - (2021): Webinar 1 - Introduction Description: Introduction to Ensembl with demos for browsing genomes and genomic regions. This video was recorded as part of a virtual workshop on 26th January 2021. </video> <video> Ensembl Browser Workshop - Day 2 (DKFZ, 27th April 2022) Description: Ensembl browser workshop (Ensembl release 106) recording for DKFZ. Timestamps: 00:00:00 Variation 00:57:06 The Variant Effect Predictor (VEP) 01:22:55 Regulation 02:00:15 BioMart 02:33:35 Closing remarks </video> <video> Virtual Workshop - The Ensembl Genome Browser - (2021): Webinar 5 - Regulation Description: Introduction to the Ensembl regulatory build with demos for browsing and retrieving information about features that regulate gene expression. This video was recorded as part of a virtual workshop on 28th January 2021. </video> <video> Ensembl Browser Workshop - Day 2 (St. Xavier's College, 29th June 2022) Description: Ensembl browser workshop (Ensembl release 106) recording for St. Xavier's College. Timestamps: 00:00:00 Variation 00:50:44 The Variant Effect Predictor (VEP) 01:12:19 Regulation </video> <video> Virtual Workshop - The Ensembl Genome Browser - (2021): Webinar 6 - BioMart and Data Visualisation Description: Introduction to the Ensembl BioMart tool and visualising custom datasets with demos. This video was recorded as part of a virtual workshop on 28th January 2021. </video> <video> Virtual Workshop - The Ensembl Genome Browser - (2021): Webinar 4 - Comparative Genomics Description: Introduction to Ensembl comparative genomics data with demos for browsing and retrieving homology and alignment data. This video was recorded as part of a virtual workshop on 27th January 2021. </video> <video> Ensembl Browser Workshop - Day 1 (St. Xavier's College, 28th June 2022) Description: Ensembl browser workshop (Ensembl release 106) recording for St. Xavier's College. Timestamps: 00:00:00 Introduction 01:01:18 Exploring genomic regions 01:27:09 Genes and transcripts </video>

Description

The Ensembl genome browser at www.ensembl.org allows scientists to investigate biological annotation of chordate (mostly vertebrate) genomes. Protein-coding and non-coding genes, splice variants, conserved regions across species, sequence variation and information about gene regulation are all available.

EnsemblGenomes at www.ensemblgenomes.org extends genome browsing to bacteria, metazoa, protists, plants and fungi.

BioMart allows all users to quickly export data in formats that can be opening in MS Excel. A Perl API allows direct access to Ensembl databases.

All Ensembl resources are free and open source. We make these videos using Camtasia (TechSmith).

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