Channel Title: Genome Wide Study Channel Description: In this channel, we will describe the bioinformatic tools used for the genome wide analysis of a protein family. We will give detailed tutorial about the data extraction from online databases, their analysis in the form of Domain or Motif, Gene structure, Physical and chemical properties, Position on the chromosome, Cis-regulatory elements in the promoter region, their differential expression and much more. So please subscribe our channel and press the Bell icon, So you will get the notification of new video regarding this project. Thanks Genome-wide analysis is an important area of research in genomics, which aims to identify and understand the function of genes across entire genomes. In recent years, advances in technology and bioinformatics tools have revolutionized our ability to study genomes, providing researchers with new insights into the complex biological processes that govern life. #bioinformatics #foryou #genome #rna #viralvideo #artificialintelligence #chromosome <video> How to add scale bar in camera photo Description: In this video we will learn that how we can add the scale bar in our image. How to add the scale bar in the image? What is scale bar? How we add scale bar? Why we add scale bar in our image? How to add camera photo scale bar? How to set the unit in the scale bar? What are the units of the image? How to show the image unit? How to optimize the unit of the scale bar? How to add scale bar in microscopic image? How to add scale bar in camera photo? How to measure the area of root? How to set the mm unit in scale bar? How to set the um unit in scale bar? How to set the cm unit in scale bar? Root scale bar #scalebar #bioinformatics </video> <video> How to add scale bar in confocal image Description: In this video we will learn that how we can add the scale bar in our image. How to add the scale bar in the image? How add scale bar in confocal generated image? How to add scale bar in camera generated image? What is scale bar? How we add scale bar? Why we add scale bar in our image? How to add camera photo scale bar? How to set the unit in the scale bar? What are the units of the image? How to show the image unit? How to optimize the unit of the scale bar? How to add scale bar in microscopic image? How to add scale bar in camera photo? How to measure the area of root? How to set the mm unit in scale bar? How to set the um unit in scale bar? How to set the cm unit in scale bar? Root scale bar #scalebar #bioinformatics </video> <video> Protein secondary structure Genome wide study 2024 Part 14 Description: In this video we will try to find out the secondary structure of the protein and try to know its construction. How to predict the secondary structure of the protein? How to determine the alpha sheet of the protein? How to determine the Beta sheet of the protein? How to determine the coil region of the protein? What is the secondary structure prediction method? What is the protein structure? #ProteinStructure Link: https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSA/npsa_sopma.html </video> <video> Gene Location on chromosome Genome wide study 2024 Part 12 Description: In this video, we will try to construct the phenogram to present the genes distribution on different chromosomes through different tools like TBTool. How to use GFF file to make gene location on chromosome? How to use tbtools to show genes on chromosome? How to make Gene ID file? How to make gene link file? How to make Gene rename file? How to make color map? How to use gene ids to make phenogram? #tbtool #chromosome #gene </video> <video> Protein Alignment Description: How to do protein sequence alignment? How to align the protein sequence? Easy way to sequence alignment How to make colorful sequence alignment? Sequence alignment in tbtools How to do alignment in muscle wrapper Muscle wrapper alignment How to remove the gaps in the alignment? Sequence alignment in one click #proteinsequence #alignment #genome </video> <video> Sequence manipulation Description: In this video we will manipulate the sequence according to the requirement. How to manipulate the sequence? How to reverse the sequence? How to get the reverse sequence of the gene? How to get the reverse complement sequence of the gene? How to convert the CDS sequence into RNA sequence? How to make the sequence in upper case? How to arrange the sequence in one line? How to remove the sequence? How to get the IDs from the sequence? How to get the only get sequence? How to remove the IDs from the sequence? How to get the IDs from the sequence? How to get the lower case of the sequence? How to get the standard Amino acid or base pairs in one line of the sequence? #Seqeunce #bioinformatics </video> <video> Primer designing and validation #ePCR Description: In this video we will validate our primers for cloning or qPCR. How to design the primer? What is epcr? What is amplifix? How to design the primer with amplifix? What is in sillico pcr? How to validate the primers for in sillico pcr? How to validate the primer for pcr? How to validate primer for qPCR? How to validate primer for gene cloning? What are the qualities of the primers? How much the size of the primer? What are the GC contents of the PCR? What is the tempertature difference between farward and Reverse Primer? Link: https://inp.univ-amu.fr/en/amplifx-manage-test-and-design-your-primers-for-pcr #tbtools #bioinformatics #Primer </video> <video> How to calculate the area of circle, irregular square images Description: In this video we will use the ImageJ to calculate the area of any type of image. How to calculate the area of circular image? How to calculate the area of regular image? How to calculate the area of irregular image? How to calculate the area of any shape of image? How to measure surface area? How to set the scale in image? How to run the imageJ? How to measure in the imageJ? How to find average in imageJ? How to measure size in imageJ? #imageJ #measurement </video> <video> Genome wide analysis Genome wide study 2024 Part 15 Description: In this video I will describe that what type of other analysis you can include in the GWA of your protein family. The link of each analysis related video is as under Differential Expression Genes: https://www.youtube.com/watch?v=5BQNnWada88 Heatmap video 1: https://www.youtube.com/watch?v=RDzYDHApB8s Heatmap video 2: https://www.youtube.com/watch?v=W9MIZPELBjo Promoter region extraction in Bulk: https://www.youtube.com/watch?v=3-VtBbj22wA Promoter region analysis: https://www.youtube.com/watch?v=8EkScj-m-vI Syteny analysis between two Species part 1: https://www.youtube.com/watch?v=8SRPF08OP1s Syteny analysis between two Species part 2: https://www.youtube.com/watch?v=zSQidPL7YwE Synteny analysis among multiple species Part 1: https://www.youtube.com/watch?v=o47UMnG2g_Y Synteny analysis among multiple species Part 2: https://www.youtube.com/watch?v=bSYuHB8wAEc Trans-membrane helices: https://www.youtube.com/watch?v=AFZd191LwpE micRNA: https://www.youtube.com/watch?v=4uAfnjEH20c PPI: https://www.youtube.com/watch?v=Sd6zicYU2l0 GO method 1: https://www.youtube.com/watch?v=0rZ8cIL4MZw&t=761s GO method 2: https://www.youtube.com/watch?v=6QAUTrVZqEg GO error method 1: https://www.youtube.com/watch?v=k6DoLN9BPtI GO error method 2: https://www.youtube.com/watch?v=kumMdNhNcMM GO Chord: https://www.youtube.com/watch?v=hyBZ1JPrqCQ GO IDs: method 1: https://www.youtube.com/watch?v=sYo5cEVarfY GO IDs method 2: https://www.youtube.com/watch?v=BNAD5I68IoA KEGG IDs: https://www.youtube.com/watch?v=lyqLMir586g KEGG Pathway map method 1: https://www.youtube.com/watch?v=3M6MwrCvN0c KEGG Pathway map method 2: https://www.youtube.com/watch?v=DYfHev_QFCA KEGG Backend file: https://www.youtube.com/watch?v=aqYPS6BTN3Q </video> <video> Sequence Extraction and Primer designing #GCRDT Part 03 Description: In this video, we will try to learn that how we can extract the sequence of the gene and design the primer. How to take the sequence for gene cloning? How to extract the CDS sequence for gene cloning? How to extract the sequence from NCBI? How to extract the sequence from Phytozome? How to use the tbtool to extract the sequence? How to design the primer for gene cloning? How to use primer3plus to design the primer for gene cloning? Gene cloning and DNA technology What are the GC content of the primer? Expression data extraction: https://www.youtube.com/watch?v=5BQNnWada88 Link for Primer3Plus: https://www.primer3plus.com/index.html #bioinformatics </video> <video> Delta delta ct method Description: In this video we will calculate the qRT PCR data through delta delta ct method. What is delta delat ct method? How to calculate the qRT PCR data? How to calculate the expression of gene through delta delta ct method? How to calculate the expression of the gene? What is ct value? qRT PCR calculation for beginners delta delta Ct method in Excel Relative fold Change of rt pcr in excel How to perform qPCR calculation using delta delta Ct method 2–∆∆Ct in excel Also describes how to calculate fold change? delta delta ct calculation excel delta ct vs delta delta ct #How to Calculate Fold change for Real-time PCR #Calculate 2^-delta delta Ct using Excel #How To Perform The Delta-Delta Ct Method #How to calculate delta delta Ct in Excel #Analysis of Real Time PCR (qRT-PCR) data: a ∆∆ct Method #Real Time QPCR Data Analysis Tutorial #Real Time QPCR Data Analysis Tutorial #How to Analyze Real-time PCR Data #How to Analyze Real-time PCR Data #How to Analyze Real-time PCR Data #Real Time PCR Analysis qPCR Terms Quantitative real time PCR (qPCR) Relative fold change 2 to the power of minus delta delta ct #genomewidestudy </video> <video> Protein modeling Genome wide study 2024 Part 13 Description: Homology modeling has become a useful tool for the prediction of protein structure when only sequence data are available. Structural information is often more valuable than sequence alone for determining protein function. Homology modeling is potentially a very useful tool for the researchers. In this video, we will discuss about the protein homology, how to do the homology analysis and result interpretation. We will use the Swiss modeling for that purpose. #genome_wide_study #swiss_modeling #Protein modeling #protein_homology Link: https://swissmodel.expasy.org/ </video> <video> Gene cloning and Recombinant DNA technology (DCRDT) Introduction Description: In this series of lectures, I will guide you all the process involved in gene cloning and recombinant DNA technology. What is gene clonig? How to clone the gene? What is clone? What is genetic engineering? What is gene? How to do recombinant DNA technology? How to transfer the gene? How to clone the gene? How to select the gene for cloning and characterization? #bioinformatics #geneclonig #dna </video> <video> Primer validation for PCR in sillico PCR Description: In this video we will validate our primers for cloning or qPCR. How to design the primer? What is in sillico pcr? How to validate the primer for pcr? How to validate primer for qPCR? How to validate primer for gene cloning? What are the qualities of the primers? How much the size of the primer? What are the GC contents of the PCR? What is the tempertature difference between farward and Reverse Primer? #tbtools #bioinformatics #Primer </video> <video> Gene selection for Project GCRDT 02 Description: In this video we try to learn that how we can select the genes for our research. How to select the genes for research? Why I choose this gene for my research? Why you selected this gene? Why you want to work on this gene? How you selected this gene? How to do the blast analysis? How to select the gene for gene cloning? Gene selection for recombinant dna technology? How to screen the genes? How to select the genes for metabolomics analysis? How to do the metabolomics research? Metabolomics and transcriptomics How to use tbtools for gene selection? How to select the gene from RNA data? How to select the gene on expression level? Expression level of the gene? Gene cloning Flavonoids Malonyl glucosides Recombinant DNA technology Expression data extraction: https://www.youtube.com/watch?v=5BQNnWada88 Sequenced Data extraction: https://www.youtube.com/watch?v=Y16FxwulL5A #gene #bioinformatics #recombinant_dna_technology #genome wide study </video>

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In this channel, we will describe the bioinformatic tools used for the genome wide analysis of a protein family. We will give detailed tutorial about the data extraction from online databases, their analysis in the form of Domain or Motif, Gene structure, Physical and chemical properties, Position on the chromosome, Cis-regulatory elements in the promoter region, their differential expression and much more. So please subscribe our channel and press the Bell icon, So you will get the notification of new video regarding this project. Thanks
Genome-wide analysis is an important area of research in genomics, which aims to identify and understand the function of genes across entire genomes. In recent years, advances in technology and bioinformatics tools have revolutionized our ability to study genomes, providing researchers with new insights into the complex biological processes that govern life.
#bioinformatics #foryou #genome #rna #viralvideo #artificialintelligence #chromosome

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